tracePlot: MCMC reporting

In BaM-tools/RBaM: Bayesian Modeling: Estimate a Computer Model and Make Uncertain Predictions

MCMC reporting

Description

2DO (adapt from STooDs): Generate pdf report files summarizing mcmc samples

Usage

tracePlot(sim, ylab = "values", keep = NULL, col = "black", psize = 0.5)

Arguments

sim	vector or matrix or data frame, MCMC simulations
ylab	Character, label of y-axis to be used if sim has no names
keep	Integer vector, indices of samples to be kept in cooked MCMC sample
col	Color
psize	Numeric, point size

Details

tracePlot

returns a trace plot ggplot (or a list thereof if several columns in sim)

Value

A ggplot (or a list thereof if several columns in sim)

Examples

# Create Monte Carlo samples
n=1000
sim=data.frame(p1=rnorm(n),p2=rlnorm(n),p3=runif(n))
# create trace plot for each component
figures=tracePlot(sim)

BaM-tools/RBaM documentation built on April 11, 2025, 10:01 p.m.