viewHumanLiver: View HumanLiver data in the scClustViz Shiny app

In BaderLab/HumanLiver: Single cell RNA sequencing of human liver reveals distinct intrahepatic macrophage populations

Description

A wrapper function to view the HumanLiver dataset in the scClustViz Shiny app.

Usage

viewHumanLiver(outPath = "./", imageFileType = "pdf", ...)

Arguments

outPath	Default = "./" (the working directory). Specify the directory used to save/load any analysis files you generate while exploring the HumanLiver data.
imageFileType	Default="pdf". The file format for saved figures. One of "pdf" (generated with cairo_pdf), "eps" (generated with cairo_ps), "tiff" (generated with tiff), or "png" (generated with png).
...	Named options that should be passed to the runApp call (these can be any of the following: "port", "launch.browser", "host", "quiet", "display.mode" and "test.mode").

Value

The function causes the scClustViz Shiny GUI app to open in a seperate window.

See Also

https://baderlab.github.io/scClustViz for information on scClustViz.

Examples

  viewHumanLiver()

BaderLab/HumanLiver documentation built on May 13, 2020, 5:05 p.m.