viewMouseCortex: View MouseCortex data in the scClustViz Shiny app

In BaderLab/MouseCortex: Developmental emergence of adult neural stem cells as revealed by single cell transcriptional profiling

Description

A wrapper function to view one of the four MouseCortex datasets in the scClustViz Shiny app.

Usage

viewMouseCortex(timepoint, outPath = "./", ...)

Arguments

timepoint	One of "e11", "e13", "e15", "e17". Referring to the different datasets in this package, which each represent an embryonic day during mouse development from which the cerebral cortex was dissected and single-cell RNAseq data collected.
outPath	Default = "./" (the working directory). Specify the directory used to save/load any analysis files you generate while exploring the MouseCortex data.
...	Named options that should be passed to the runApp call (these can be any of the following: "port", "launch.browser", "host", "quiet", "display.mode" and "test.mode").

Value

The function causes the scClustViz Shiny GUI app to open in a seperate window.

See Also

https://baderlab.github.io/scClustViz for information on scClustViz.

Examples

  viewMouseCortex("e11")

BaderLab/MouseCortex documentation built on March 31, 2020, 5:45 a.m.