viewRetinaSC: View HumanLiver data in the scClustViz Shiny app

In BaderLab/RetinaSC: vdK lab retinal stem cells

Description

A wrapper function to view the HumanLiver dataset in the scClustViz Shiny app.

Usage

viewRetinaSC(dataSet = "All", outPath = "./", imageFileType = "tiff", ...)

Arguments

dataSet	One of "All" or "RSCsOnly" for the full dataset or the subset of predicted retinal stem cell clusters respectively.
outPath	Default = "./" (the working directory). Specify the directory used to save/load any analysis files you generate while exploring the HumanLiver data.
imageFileType	Default="pdf". The file format for saved figures. One of "pdf" (generated with cairo_pdf), "eps" (generated with cairo_ps), "tiff" (generated with tiff), or "png" (generated with png).
...	Named options that should be passed to the runApp call (these can be any of the following: "port", "launch.browser", "host", "quiet", "display.mode" and "test.mode").

Value

The function causes the scClustViz Shiny GUI app to open in a seperate window.

See Also

https://baderlab.github.io/scClustViz for information on scClustViz.

Examples

## Not run: 
  viewRetinaSC("All")

## End(Not run)

BaderLab/RetinaSC documentation built on Dec. 17, 2021, 10:44 a.m.