BarryLab01/vaxpack: Provide Fast Population Genetic Analysis For A Single Gene

A package for quickly analysing the diversity within a gene of a haploid organism, all in the same place.The input requires aligned .fasta files and receive population genetic statistics in no time. The package is very easy to use relative to other R packages, and is intended for biologists with minimal command line based knowledge.The graphical output includes Tajima's D, Segregation Sites (S), and nucleotide diversity plots. You can customize your own minior allele frequency cut-off point, and sliding window scales.

Getting started

Package details

MaintainerElijah Martin <1elijahmartin@gmail.com>, Myo Naung <naung.m@wehi.edu.au>
LicenseMIT + file LICENSE
Version0.1.0
Package repositoryView on GitHub
Installation Install the latest version of this package by entering the following in R:
install.packages("remotes")
remotes::install_github("BarryLab01/vaxpack")
BarryLab01/vaxpack documentation built on Feb. 8, 2021, 3:19 a.m.