canning_surfR: Reads in external data, combines with internal datasets and...

In Bartesto/monitoR: Functions to aid in reporting on the Swan and Canning Rivers

Description

canning_surfR takes a file path to Canning River sonde output and creates a four panel (single column) surfer plot of salinity, dissolved oxygen, chlorophyll a, and temperature in pdf format. The function creates a directory called ‘plots/' in the file path to store the pdf’s. Code expects only 2 excel workbooks for one monitoring run. Note sonde data from EXO models reads depth from the VPos metric. All other sonde models use a variant of a depth metric.

Usage

canning_surfR(path, obac, onic)

Arguments

path	Character string filepath to location of sonde data xlsx workbooks.
obac	Character string ("green", "blue" or "red") indicating oxygenation plant status at site BAC.
onic	Character string ("green", "blue" or "red") indicating oxygenation plant status at site NIC.

Details

Surfer plots display a cross-section of the river where the metrics of interest have been interpolated between sonde locations. Thin plate spline has been used for the interpolation.

A river "bottom" is displayed which puts the interpolation in context. The river bottom has been derived from a combination of historical maximum depths at sampling locations as well as station points extracted from a "best" navigation line over the latest corporate bathymetry. See project documentation for further details.

Value

A pdf format four panel surfer plot of the Canning River. Saved to a directory called 'plots/'.

Author(s)

Bart Huntley, [e-mail]

Examples

## Not run: 
canning_surfR(path = "Z:/DEC/MonitoringProgram/Data", obac = "green", onic = "red")

## End(Not run)

Bartesto/monitoR documentation built on Aug. 17, 2019, 12:37 a.m.