Files in BelenJM/supeRbaits
Sample Baits From Sequences
.Rbuildignore
.github/workflows/R-CMD-check.yml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/RcppExports.R
R/blast_baits.R
R/check_functions.R
R/do_baits.R
R/helper_functions.R
R/load_functions.R
R/print_functions.R
R/superBaits-package.R
R/zzz.R
README.md
figure2.jpg
inst/example_data/exclusions.txt
inst/example_data/long_sequences.txt
inst/example_data/regions.txt
inst/example_data/sequences.txt
inst/example_data/targets.txt
man/assign_n_per_seq.Rd
man/blast_baits.Rd
man/check_chr_boundaries.Rd
man/check_chr_names.Rd
man/check_lengths.Rd
man/check_restrict.Rd
man/convert_line_endings.Rd
man/coverage.Rd
man/do_baits.Rd
man/extract_nucleotides.Rd
man/find_executable.Rd
man/gc_table.Rd
man/load_exclusions.Rd
man/load_lengths.Rd
man/load_regions.Rd
man/load_targets.Rd
man/make_blast_db.Rd
man/print_coverage.Rd
man/standardize_lines.Rd
man/supeRbaits.Rd
src/RcppExports.cpp
src/dos2unix.cpp
src/extractNucleotides.cpp
src/fixLineLength.cpp
src/getBaits.cpp
src/getChromLengths.cpp
src/importBlastResults.cpp
src/removeNLs.cpp
src/sampleBaits.cpp
src/supeRbaits.so
src/writeFasta.cpp
supeRbaits.png
tests/testthat.R
tests/testthat/exclusions_bad_length.txt
tests/testthat/exclusions_bad_name.txt
tests/testthat/saturated_simple_results.RData
tests/testthat/test_supeRbaits.R
vignettes/Figure1_manual.png
vignettes/fasta_example.jpg
vignettes/output1.jpg
vignettes/output2.jpg
vignettes/regions_example.jpg
vignettes/vignette1.Rmd
