blast_baits: Blast baits against a database
In BelenJM/supeRbaits: Sample Baits From Sequences
Description
Usage
Arguments
Value
Description
Finds the number of matches for each bait generated by the do_baits function. Uses BLAST to match the baits against
either the same database, or a different one (if using the argument db). The blastn parameters can be adjusted using
the blastn_args argument. The following parameters are already set and should not be changed: -db, -query, -out and -outfmt.
Usage
1
blast_baits(x, db = NULL, blastn_args = "")
Arguments
x
the output of the do_baits function
db
OPTIONAL: A FASTA file against which the baits should be blased. If left empty, the database from which
the baits were created is used.
blastn_args
Additional parameters that can be passed to the blastn call.
Value
The same output as do_baits, but with an additional column in the baits showing the number of matches.
BelenJM/supeRbaits documentation built on Jan. 28, 2022, 1:44 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
Description
Finds the number of matches for each bait generated by the do_baits function. Uses BLAST to match the baits against either the same database, or a different one (if using the argument db). The blastn parameters can be adjusted using the blastn_args argument. The following parameters are already set and should not be changed: -db, -query, -out and -outfmt.
Usage
1 | blast_baits(x, db = NULL, blastn_args = "")
|
Arguments
x |
the output of the do_baits function |
db |
OPTIONAL: A FASTA file against which the baits should be blased. If left empty, the database from which the baits were created is used. |
blastn_args |
Additional parameters that can be passed to the blastn call. |
Value
The same output as do_baits, but with an additional column in the baits showing the number of matches.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.