Man pages for BelenJM/supeRbaits
Sample Baits From Sequences
| assign_n_per_seq | Distribute the overall number of baits by the multiple... |
| blast_baits | Blast baits against a database |
| check_chr_boundaries | Check that start and end points fall within chromosome... |
| check_chr_names | Check chromosome name consistency |
| check_lengths | Check if the lengths dataframe follows the expected standards |
| check_restrict | Check if restrict is compatible with the number of sequences... |
| convert_line_endings | Convert line endings from DOS to UNIX format |
| coverage | Compile tables with coverage values per chromosome |
| do_baits | Generates random baits |
| extract_nucleotides | Extract specific nucleotide sequences |
| find_executable | Adapted from rBLAST's .findExecutable function |
| gc_table | Compile tables with min, mean and max GC contents per group... |
| load_exclusions | Load file with areas of the chromosome to avoid |
| load_lengths | Compile sequence lengths from a FASTA format file |
| load_regions | Load file with areas of the chromosome to target |
| load_targets | Load file with points in the chromosome to target |
| make_blast_db | copied from rBLAST's makeblastdb function |
| print_coverage | Print graphics with coverage per sequence |
| standardize_lines | Ensure the database nucleotide lines have the same length |
| supeRbaits | supeRbaits: Sample Baits From Sequences |
