Man pages for BenWilliams-NOAA/rockfishr
| ageage | Title |
| base_plots | all basic plost forsafe doc |
| best_f | Best F |
| clean_catch | clean up catch data |
| clean_raw | clean up all the raw data |
| collapse_row | helper function for creating dat file |
| concat_dat | Concatenate a .dat file |
| fac_table | fishery age comp table |
| fish_age_comp | Fishery age composition |
| fish_size_comp | Fishery size composition data |
| fsc_table | fishery size comp table |
| like_table | Likelihood table to generate table 11 in the SAFE |
| modeldir | model function directory and tpl files |
| mohn | Calculate Mohn's rho "mean version" |
| param_table | param_table to generate table 15 in the SAFE |
| pipe | Pipe operator |
| plot_biomass | Plot MCMC estimated biomass |
| plot_catch | Plot catch |
| plot_comps | Plot age and length compositions |
| plot_params | Plot parameter histograms |
| plot_phase | Phase plot |
| plot_re | plot random effects model by GOA area |
| plot_rec | Plot recruitment estimates |
| plot_rec_ssb | Recruitment/SSB plot |
| plot_retro | retrospective plot |
| plot_retro_survey | retrospective survey plot |
| plot_selex | Plot selectivity at age |
| plot_survey | Plot survey biomass |
| plot_swath | Swath plot |
| process_results | Process model results for tables and figs |
| proj_data | project data for "Best F" |
| purrit | helper function for comp data |
| raw_data | Raw data call from AFSC and AKFIN servers |
| recruit_table | recruit table to generate table 14 in the SAFE |
| run_retro | Run retrospectives |
| sac_table | survey age comp table |
| size_at_age | compute size at age (length at age and length sd) |
| ssc_table | survey size comp table |
| survey_age_comp | Survey age comp |
| survey_biomass | Get the survey biomass |
| survey_size_comp | Survey size composition |
| weight_at_age | estimate allometric relationship and weight-at-age |
