validate_library_frame: Validate Library names/locations in a Dataframe

In BenaroyaResearch/BRIRUtils: R utilities for RNA-seq processing at BRI

Description

validate standard RNA-seq data: counts, design, metrics, and summary files.

Usage

validate_library_frame(counts, design, metrics = NULL, summary = NULL,
  countsField = "colnames", designField = "libid",
  metricsField = "libid", summaryField = "libid")

Arguments

counts	counts dataframe
design	design dataframe
metrics	metrics dataframe (optional)
summary	summary dataframe (optional)
countsField	counts library field - usually column names
designField	design library field - either the row names, or a column in the dataframe
metricsField	metrics library field - either the row names, or a column in the dataframe
summaryField	metrics library field - either the row names, or a column in the dataframe

Value

boolean

Author(s)

Scott R Presnell, [e-mail]

BenaroyaResearch/BRIRUtils documentation built on May 8, 2019, 1:15 p.m.