| checkCuts | checkCuts | 
| cuts | A GRanges object of differentially methylated MspI cut sites... | 
| diffMeth | diffMeth | 
| msgbsR | msgbsR | 
| plotCircos | plotCircos | 
| plotCounts | plotCounts | 
| ratdata | Read counts of potential MspI cut sites from a MS-GBS... | 
| ratdata2 | Read counts of correct MspI cut sites from a MS-GBS... | 
| rawCounts | rawCounts | 
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