Man pages for BenjaminPlanterose/UMtools
An R-package for analysing Illumina DNA Methylation arrays at the fluorescence intensity level
| annot_450K | Genetic variants associated to Illumina Infinium... |
| annot_EPIC | Genetic variants associated to Illumina Infinium... |
| bGMM | Bivariate Gaussian Mixture Model |
| bimodality_coefficient | Bimodality coefficient (Copied from the deprecated R-package... |
| classification_CpG_SNP_450K | Classification of CpG/SBE-SNPs in the Illumina Infinium... |
| classification_CpG_SNP_EPIC | Classification of CpG/SBE-SNPs in the Illumina Infinium... |
| compute_BC_CV | BC(CV) |
| compute_CV | CVlogT |
| CR_probes | List of in silico-predicted cross-reactive probes in the... |
| density_jitter_plot | Density-jitter plot |
| export_bigmat | Export big matrices |
| GR_to_UM | Green/Red to Unmethylated/Methylated |
| import_bigmat | Import big matrices |
| Kcall_CpG | K-caller |
| kurtosis | Excess kurtosis (Copied from the deprecated R-package modes) |
| par_EW_Kcalling | Epigenome-wide K-calling |
| skewness | Skewness (Copied from the deprecated R-package modes) |
| training_set | K-caller (Training Set; EUR, Illumina Infinium... |
| train_k_caller | K-caller performance for a given set of eps and minPts |
| triallelic_CpG_SNP_450K | Tri-allelic SNPs associated to Illumina Infinium... |
| triallelic_CpG_SNP_EPIC | Tri-allelic SNPs associated to Illumina Infinium... |
| UM_plot | U/M plot |
| Visualize_cometh | Co-methylation plot |
