density_jitter_plot: Density-jitter plot

In BenjaminPlanterose/UMtools: An R-package for analysing Illumina DNA Methylation arrays at the fluorescence intensity level

Density-jitter plot

Description

Overlaps a density plot with a jitter plot. A random y-component is added to cause the spread of points.

Usage

density_jitter_plot(
  mat,
  CpG,
  sex = NULL,
  alpha = 0.5,
  lambda = 0.05,
  main = NULL
)

Arguments

mat	Matrix of a continous varible such as beta-value, M-value, CVlogT, etc (CpGs as rows and samples as columns)
CpG	Targeted CpG
sex	vector of sex. First level is expected to be Female (coloured pink). Check levels(sex) to see if that is the case.
alpha	Transparency
lambda	Regulates the random spread of the points
main	Title name

Value

Graphics

Examples

density_jitter_plot(beta_value, "cg00050873", pheno$sex)

BenjaminPlanterose/UMtools documentation built on Aug. 19, 2024, 4:54 a.m.