update_global_basic_levels: Updates global basic levels in all_basiclevel_na
In BergelsonLab/blabr: a toolbox for working in the BLAB

update_global_basic_levels

R Documentation

Updates global basic levels in all_basiclevel_na

Updates global basic levels in all_basiclevel_na

update_global_basic_levels(all_basic_level_na_path)

all_basic_level_na_path

Path to the all_basiclevel_na.csv file created using blabpy.seedlings.pipeline.make_updated_all_basic_level_here

Loads

the temporary all_basiclevel_na.csv
object_dict and annotid_disambiguation used for mapping objects/tokens to their global basic level - from the all_basiclevel repo.

Then adds a global_bl column to all_basiclevel_na if it can.

If it can, it will return all_basiclevel_na with the new global_bl column.

If it can't, it will throw an error and provide instructions on how to update the global basic level mappings.

BergelsonLab/blabr documentation built on Dec. 22, 2024, 9:32 p.m.

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