model_birds_cpts: Build changepoint models and plots for multiple species....

In BibelnieksDFW/BrBS: Exploratory Analysis and Visualizations for BBS database

Build changepoint models and plots for multiple species. Convenient wrapper for applying to multiple species at once. Modeling driven by model_cpts and plotting done by plot_cpts_model.

Description

Build changepoint models and plots for multiple species. Convenient wrapper for applying to multiple species at once. Modeling driven by model_cpts and plotting done by plot_cpts_model.

Usage

model_birds_cpts(
  dat,
  min_len = 10,
  alpha = 0.05,
  multiplicity = "BH",
  boot_iter = 10^3,
  robust_se = FALSE,
  verbose = TRUE
)

Arguments

dat	Dataframe with time and count.
min_len	Minimum time length (data points) to model changepoints.
alpha	Specify level at which to control FWE or FDR.
multiplicity	Specify form of multiplicity control. One of "none", "bonferroni", "BH" (equivalently, "FDR"), "BY". Defaults to "BH"
boot_iter	Number of bootstrap iterations for changepoint selection statistic.
robust_se	Flag for including HAC robust standard errors from package 'sandwich' in plots.
verbose	Flag for printing timing and progress updates.

Value

A tibble with species_code (char), models (list of list of negbin objects), paths (list of path lists), fit_plots, resid_plots, and unexp_plots (all lists of ggplots)

BibelnieksDFW/BrBS documentation built on April 20, 2022, 12:54 a.m.