sRGES_example: Data of computed example sRGEs for HCC vs liver adjacent...

In Bin-Chen-Lab/OCTAD: Open Cancer TherApeutic Discovery (OCTAD)

Data of computed example sRGEs for HCC vs liver adjacent tissues on octad.small dataset

Description

Data of computed example sRGEs for HCC vs liver adjacent tissues on octad.small dataset

Usage

sRGES_example

Format

A tibble with 12,442 rows and 6 variables:

pert_iname

dbl Year price was recorded

mean

mean sRGES for obtained drug if n>1

n

times this drug was obtained

median

median sRGES for drug if n>1

sd

standart deviation for obtained drug if n>1

sRGES

sRGES score of the drug

Details

To generate this dataset use the following code from the octad package load differential expression example for HCC vs adjacent liver tissue computed in diffExp() function from res_example.
data('res_example',package='octad.db')
res=subset(res_example,abs(log2FoldChange)>1&padj<0.001) #load example expression dataset
sRGES=runsRGES(res,max_gene_size=100,permutations=1000,output=FALSE)

Bin-Chen-Lab/OCTAD documentation built on Jan. 28, 2023, 12:04 p.m.