plot_volcano: Volacno Plot

In BioAlvaro/MQanalyser: Analyse the proteomics LC-MS/MS data from MaxQuant.

Volacno Plot

Description

Volacno Plot

Usage

plot_volcano(
  proteomics_results = NULL,
  sample_comparison = NULL,
  alpha = 0.8,
  foldchange_cutoff = 1.5,
  p_value_cutoff = 0.05,
  color_down = "cyan3",
  color_up = "brown2",
  p_adj = TRUE,
  show_genes_user = FALSE,
  user_genes_de = NULL,
  color_genes_de = "#800080",
  coord_x = NULL,
  coord_y = NULL,
  show_genes_names = FALSE,
  brushed_Points = NULL,
  font_gene_names = NULL
)

Arguments

p_value_cutoff

BioAlvaro/MQanalyser documentation built on March 18, 2022, 4:32 a.m.