NEWS.md

In BioDataScience-Course/BioDataScience2: A Series of Learnr Documents for Biological Data Science 2

BioDataScience2 2024.9.0

• Learnrs B09La_db and B09Lb_mds and B10La_som revised for 2024-2025.

BioDataScience2 2024.8.0

• Learnrs B08La_mfa and B08Lb_bigd revised for 2024-2025.

BioDataScience2 2024.7.0

• Learnrs B07La_pca and B07Lb_ca revised for 2024-2025.

BioDataScience2 2024.6.0

• Learnrs B06La_ahc and B06Lb_kmeans revised for 2024-2025.

BioDataScience2 2024.5.0

• Learnr B05La_nls revised for 2024-2025.

BioDataScience2 2024.4.0

• Learnr B04La_glm revised for 2024-2025.

BioDataScience2 2024.3.0

• Learnr B03La_mod_lin revised for 2024-2025.

BioDataScience2 2024.2.0

• Learnrs B02La_reg_multi and B02LA_reg_poly revised for 2024-2025.

BioDataScience2 2024.1.0

• All learnrs inactivated except those of module 1.

• Shiny apps in v2.0.0 (recording in the events table).

• Learnrs B00La_refresh, B01La_reg_lin and B01Lb_residuals revised for 2024-2025.

BioDataScience2 2024.0.0

• New version for the academic year 2024-2025.

• The Shiny app for linear regression is reworked to match new convention y = a + bx.

• Course issues now use templates.

BioDataScience2 2023.9.0

• Learnrs B09La_db, B09Lb_mds and B10La_som revised for 2023-2024.

BioDataScience2 2023.8.0

• Learnrs B08La_mfa and B08Lb_bigd revised for 2023-2024.

BioDataScience2 2023.7.0

• Learnrs B07La_pca and B07Lb_ca revised for 2023-2024.

• Challenge B07Ca_multi Shiny app added.

BioDataScience2 2023.6.0

• Learnrs B06La_ahc and B06Lb_kmeans revised for 2023-2024.

BioDataScience2 2023.5.0

• Learnr B05La_nls revised for 2023-2024.

BioDataScience2 2023.4.0

• New learnr B04La_glm added for 2023-2024.

BioDataScience2 2023.3.0

• Learnr B03La_mod_lin revised for 2023-2024.

BioDataScience2 2023.2.0

• Learnrs B02La_reg_multi and B02Lb_reg_poly ready.

BioDataScience2 2023.1.0

• Learnrs B00La_refresh, B01La_reg_lin and B01Lb_residuals ready.

BioDataScience2 2023.0.0

• New version for the academic year 2023-2024.

• The addin to select learnrs or Shiny apps now detects inactivated items and takes them out of the list.

• A new addin to create a course issue is added.

BioDataScience2 2022.6.1

• Slight adaptations to B09La_db.

BioDataScience2 2022.6.0

• A new tutorial B09La_db is added.

• Learnr tutorials B09Lb_mds and B10La_som are revised.

BioDataScience2 2022.5.0

• A new tutorial B08Lb_bigd is added.

BioDataScience2 2022.4.0

• A new tutorial B07Lb_ca is added.

• Learnr B06Lb_kmeans revised, and exercises on diversity indices added.

• Revision and restructuration of all learnrs for modules 6 to 10.

BioDataScience2 2022.3.1

• Learnr version for B05La_nls incremented to try solving the problem of one student stuck with this learnr.

BioDataScience2 2022.3.0

• Learnr B05La_nls revised

• Shiny application B04... renamed B05...

BioDataScience2 2022.2.0

• Learnr B02Lb_reg_poly completely rewritten

• Learnr B02La_reg_multi completely rewritten

BioDataScience2 2022.1.1

• Learnrs B00 and B01 revised

• Dataser rice added

• All images are compressed

BioDataScience2 2022.1.0

• All learnr exercices adapted and tested with svbox2022.

• Reorganization of learnrs and addition of new ones (course 8 modules -> 10 modules).

BioDataScience2 2022.0.0

• New version for the academic year 2022-2023.

BioDataScience2 2021.0.3

• Better hints in B03La_mod_lin.

BioDataScience2 2021.0.2

• Correction of one quiz that had several answers set to NA in B02La_reg_multi.

BioDataScience2 2021.0.1

• Minor change in the template for an exercise in B01Lb_reglin1: it was not clear that plot(correlation(....)) should be used because the template was just correlation(....). Students had to look at hints to understand that.

BioDataScience2 2021.0.0

• Start of 2021 series for academic year 2021-2022.

• Moved from {learndown} to {learnitdown}.

BioDataScience2 2020.9.0

• A new tutorial B08La_mfa is added.

BioDataScience2 2020.8.2

• In the B07La_pca tutorial, chart$<type>() does not work properly in specific cases. A work-around is introduced.

BioDataScience2 2020.8.1

• In the B07La_pca tutorial, chart$<type>() does not work properly in specific cases. This is an attempt to fix it.

BioDataScience2 2020.8.0

• New tutorial B07La_pca in version 2.

• Praise sentences in English are eliminated from result outputs of {gradethis}.

BioDataScience2 2020.7.0

• Tutorial B06Lc_som migrated to version 2.

BioDataScience2 2020.6.0

• Tutorial B06Lb_mds migrated to version 2.

BioDataScience2 2020.5.0

• Tutorial B06La_kmeans migrated to version 2.

BioDataScience2 2020.4.1

• A bug in learnr that cannot run chart$horizontal() in B05La_cah is eliminated.

BioDataScience2 2020.4.0

• "Tutorial" B99La_avis added to get a quick feedback from the students.

• Tutorial B05La_cah finalized.

BioDataScience2 2020.3.1

• Tutorials that are not in final stage are now placed in the devel/ directory.

BioDataScience2 2020.3.0

• New tutorial B04La_nls.

• New Shiny apps B04Sa_micmen, B04Sb_exponent, B04Sc_logis, B04Sd_gen_logis, B04Se_gompertz and B04Sf_richards.

BioDataScience2 2020.2.4

• Minor correction in B03La_mod_lin.

BioDataScience2 2020.2.3

• Update B03La_mod_lin.

BioDataScience2 2020.2.2

• Minor correction in B02la_reg_multi.

BioDataScience2 2020.2.1

• Minor correction in B02lB_reg_poly.

BioDataScience2 2020.2.0

• Update B02La_reg_multi and B02Lb_reg_poly.

BioDataScience2 2020.1.1

• Update all tutorials with SciViews Box 2020 and {BioDatascience} package.

BioDataScience2 2020.1.0

• Update B01La_rappel and B01Lb_reglin1 for better interaction with the {gradethis} package.

BioDataScience2 2020.0.0

• Preparation for accademic year 2020-2021.

• Update all tutorials with SciViews Box 2020, and name change with B01Xa_name, with 'B' refers to second course, '01' to first module, 'X' being L for learnr or S for Shiny and 'a' the sequence in case there are several similar items in the same module.

• RStudio addins for easier application selection.

BioDataScience2 2019.11.0

• Tutorial 06b_mds and 06c_som added.

BioDataScience2 2019.11.0

• Tutorial 06a_kmeans added.

BioDataScience2 2019.10.0

• Tutorial 05a_distance_matrix finished.

BioDataScience2 2019.9.0

• New Shiny app 04e_gompertz.

BioDataScience2 2019.8.0

• Shiny app 04c_logis and 04d_gen_logis added.

BioDataScience2 2019.7.0

• Shiny app 04a_michaelis_menten and 04b_exponent added.

BioDataScience2 2019.6.0

• Tutorial 03a_mod_lin finalized.

BioDataScience2 2019.5.0

• Tutorial 02a_reg_multi finalized.

BioDataScience2 2019.4.0

• Tutorial 02b_reg_poly finalized.

BioDataScience2 2019.3.0

• Tutorial 01b_reg_lin: minor correction.

BioDataScience2 2019.2.0

• Tutorial 01b_reg_lin finalized.

BioDataScience2 2019.1.0

• Tutorial 01a_rappel finalized.

BioDataScience2 2019.0.0

• First versioned version (first number is the academic year, e.g., 2019.0.0 is for academic year 2019-2020).

BioDataScience-Course/BioDataScience2 documentation built on April 12, 2025, 9:45 a.m.