gene.geneslist.statistic: A function to compute association measures between a gene of...

In Bioconductor/CoCiteStats: Different test statistics based on co-citation.

A function to compute association measures between a gene of interest and a list of genes.

Description

Whether or not a gene has an association with another gene, or a set of genes is measured using co-citation in PubMed as a basis for measuring that association.

Usage

gene.geneslist.statistic(gene, geneslist, paperLens = paperLen())

Arguments

gene	The Entrez Gene ID for the gene of interest.
geneslist	A vector of Entrez Gene ID for the set of genes.
paperLens	A vector containing the number of genes cited by each paper.

Value

To be filled in later.

Author(s)

R. Gentleman

References

Testing Gene Associations Using Co-citation, by B. Ding and R. Gentleman. Bioconductor Technical Report, 2004

See Also

twowayTable, link{gene.gene.statistic}

Examples

  g1 = "101"
  gl = c("10014", "10015", "10016", "10017", "10018")
  pL = paperLen()
  s1 = gene.geneslist.statistic(g1, gl, pL)
  s1

Bioconductor/CoCiteStats documentation built on Oct. 29, 2023, 4:16 p.m.