GSE62944-package | R Documentation |
ExpressionSet
object.TCGA re-processed RNA-Seq data from 9264 Tumor Samples and 741 normal
samples across 24 cancer types and made it available as GEO
accession
[GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944).
These data have been parsed into a SummarizedExperiment
objects and
are available in ExperimentHub
.
See the vignette for examples of using these data in differential gene expression analysis.
browseVignettes("GSE62944")
Details of how these data were creates are in the scripts/ directory of the source package.
library(ExperimentHub)
hub <- ExperimentHub()
x <- query(hub, c("GSE62944", "tumor"))
x
y <- query(hub, c("GSE62944", "normal"))
y
## Not run:
## download resource
se_tumor = x[[1]]
se_normal = y[[1]]
## End(Not run)
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