GSE62944-package: GEO accession GSE62944 available as an 'ExpressionSet'...

In Bioconductor/GSE62944: GEO accession data GSE62944 as a SummarizedExperiment

GEO accession GSE62944 available as an ExpressionSet object.

Description

TCGA re-processed RNA-Seq data from 9264 Tumor Samples and 741 normal samples across 24 cancer types and made it available as GEO accession [GSE62944](http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE62944). These data have been parsed into a SummarizedExperiment objects and are available in ExperimentHub.

Details

See the vignette for examples of using these data in differential gene expression analysis.

browseVignettes("GSE62944")

Details of how these data were creates are in the scripts/ directory of the source package.

Examples

library(ExperimentHub)
hub <- ExperimentHub()
x <- query(hub, c("GSE62944", "tumor"))
x
y <- query(hub, c("GSE62944", "normal"))
y
## Not run: 
## download resource
se_tumor = x[[1]]
se_normal = y[[1]]

## End(Not run)

Bioconductor/GSE62944 documentation built on May 2, 2024, 4:21 p.m.