GDC-defunct: Defunct functionality in the 'GenomicDataCommons' package

In Bioconductor/GenomicDataCommons: NIH / NCI Genomic Data Commons Access

Defunct functionality in the 'GenomicDataCommons' package

Description

The 'legacy' endpoint was removed after the GDC API release version 'v3.28.0'. This means that legacy data is no longer available via the GDC API. The 'legacy' features in the 'GenomicDataCommons' package are defunct.

Usage

legacy(x, legacy)

## S3 method for class 'GDCQuery'
legacy(x, legacy)

Arguments

x	the objects on which to set fields
legacy	logical(1) DEFUNCT; no longer in use.

Details

This includes the S3 generic and method for setting the legacy parameter ('legacy' and 'legacy.GDCQuery')

Value

An error. This feature is no longer used.

Functions

• legacy(GDCQuery): set legacy field on a GDCQuery object

See Also

https://docs.gdc.cancer.gov/API/Release_Notes/API_Release_Notes/#v3280

Examples

qcases <- query("cases")

Bioconductor/GenomicDataCommons documentation built on April 27, 2024, 1:19 p.m.