Man pages for Bioconductor/GenomicRanges
Representation and manipulation of genomic intervals
| absoluteRanges | Transform genomic ranges into "absolute" ranges |
| constraint | Enforcing constraints thru Constraint objects |
| coverage-methods | Coverage of a GRanges or GRangesList object |
| DelegatingGenomicRanges-class | DelegatingGenomicRanges objects |
| findOverlaps-methods | Finding overlapping genomic ranges |
| GenomicRanges-comparison | Comparing and ordering genomic ranges |
| GenomicRangesList-class | GenomicRangesList objects |
| genomic-range-squeezers | Squeeze the genomic ranges out of a range-based object |
| genomicvars | Manipulating genomic variables |
| GNCList-class | GNCList objects |
| GPos-class | Memory-efficient representation of genomic positions |
| GRanges-class | GRanges objects |
| GRangesFactor-class | GRangesFactor objects |
| GRangesList-class | GRangesList objects |
| inter-range-methods | Inter range transformations of a GRanges or GRangesList... |
| intra-range-methods | Intra range transformations of a GRanges or GRangesList... |
| makeGRangesFromDataFrame | Make a GRanges object from a data.frame or DataFrame |
| makeGRangesListFromDataFrame | Make a GRangesList object from a data.frame or DataFrame |
| nearest-methods | Finding the nearest genomic range/position neighbor |
| phicoef | Calculate the "phi coefficient" between two binary variables |
| setops-methods | Set operations on genomic ranges |
| strand-utils | Strand utilities |
| subtract-methods | Subtract a set of genomic ranges from a GRanges object |
| tileGenome | Put (virtual) tiles on a given genome |
| tile-methods | Generate windows for a GenomicRanges |
