add_resource: Add a hub resource
In Bioconductor/HubPub: Utilities to create and use Bioconductor Hubs

View source: R/add_resource.R

add_resource

R Documentation

Add a hub resource

Description

This function adds a hub resource to the AH or EH package metadata.csv file. It can be used while creating a new hub package or for adding data to an existing package.

Usage

add_resource(package, fields, metafile = "metadata.csv")

Arguments

`package`	A `character(1)` with the name of an existing hub package or the path to a newly created (not yet submitted/accepted) hub package.
`fields`	A named list with the data to be added to the resource. Elements and content of the list are described in `?hub_metadata`.
`metafile`	A `character(1)` with the name of the metadata csv file. The default file name is 'metadata.csv'.

Value

Path to metadata file where resource was added

Examples

## create a mock package
pkgdir <- tempdir()
create_pkg(file.path(pkgdir, "recordPkg"), "ExperimentHub")

## create a metadata record
meta <- hub_metadata(
    Title = "ENCODE",
    Description = "a test entry",
    BiocVersion = "4.1",
    Genome = NA_character_,
    SourceType = "JSON",
    SourceUrl = "https://www.encodeproject.org",
    SourceVersion = "x.y.z",
    Species = NA_character_,
    TaxonomyId = as.integer(9606),
    Coordinate_1_based = NA,
    DataProvider = "ENCODE Project",
    Maintainer = "tst person <tst@email.com>",
    RDataClass = "data.table",
    DispatchClass = "Rda",
    Location_Prefix = "s3://annotationhub/",
    RDataPath = "ENCODExplorerData/encode_df_lite.rda",
    Tags = "ENCODE:Homo sapiens"
)

## add the record to the metadata
add_resource(file.path(pkgdir, "recordPkg"), meta)

Bioconductor/HubPub documentation built on May 4, 2024, 8:23 a.m.