API for Bioconductor/Organism.dplyr
dplyr-based Access to Bioconductor Annotation Resources
| Global functions | |
|---|---|
| .UTRsByTranscript | Source code |
| .add_view | Source code |
| .alter_ensembl_ids | Source code |
| .alter_table | Source code |
| .byFun | Source code |
| .checkCompatibleStartEnds | Source code |
| .checkDepth | Source code |
| .check_filters | Source code |
| .cleanOutput | Source code |
| .deleteTempTables | Source code |
| .fieldToClass | Source code |
| .fields | Source code |
| .filterByKeys | Source code |
| .filterFactory | Source code |
| .filter_init | Source code |
| .filter_list | Source code |
| .filter_names | Source code |
| .findPkg | Source code |
| .findTable | Source code |
| .fullJoin | Source code |
| .getAllTableValues | Source code |
| .getFields | Source code |
| .getSeqinfo | Source code |
| .getSplicings | Source code |
| .get_ensembl_id_len | Source code |
| .innerJoin | Source code |
| .is_columns_afl | Source code |
| .iterTable | Source code |
| .leftJoin | Source code |
| .onLoad | Source code |
| .onUnload | Source code |
| .parseFilterInput | Source code |
| .promoters_tbl | Source code |
| .removeTables | Source code |
| .selectColumns | Source code |
| .src_organism_dbpath | Source code |
| .src_ucsc_binomial | Source code |
| .src_ucsc_builds | Source code |
| .src_ucsc_ids | Source code |
| .src_ucsc_missing_id_and_genome | Source code |
| .src_ucsc_org | Source code |
| .src_ucsc_organism | Source code |
| .src_ucsc_txdb_packages | Source code |
| .supportedFilters | Source code |
| .tableNames | Source code |
| .tblFunctions | Source code |
| .tblFunctionsBy_UTR | Source code |
| .tbl_join | Source code |
| .toGRanges | Source code |
| .toGRangesList | Source code |
| .updateSeqinfo | Source code |
| .valid_condition | Source code |
| .xscripts | Source code |
| .xscriptsBy_tbl | Source code |
| .xscripts_tbl | Source code |
| AccnumFilter | Man page |
| AliasFilter | Man page |
| BasicFilter-class | Man page |
| CdsChromFilter | Man page |
| CdsIdFilter | Man page |
| CdsNameFilter | Man page |
| CdsStrandFilter | Man page |
| CharacterFilter-class | Man page |
| EnsemblFilter | Man page |
| EnsemblprotFilter | Man page |
| EnsembltransFilter | Man page |
| EnzymeFilter | Man page |
| EvidenceFilter | Man page |
| EvidenceallFilter | Man page |
| ExonChromFilter | Man page |
| ExonStrandFilter | Man page |
| FlybaseCgFilter | Man page |
| FlybaseFilter | Man page |
| FlybaseProtFilter | Man page |
| GeneChromFilter | Man page |
| GeneStrandFilter | Man page |
| Genomic-Extractors | Man page |
| GoFilter | Man page |
| GoallFilter | Man page |
| IntegerFilter-class | Man page |
| IpiFilter | Man page |
| MapFilter | Man page |
| MgiFilter | Man page |
| OmimFilter | Man page |
| OntologyFilter | Man page |
| OntologyallFilter | Man page |
| PfamFilter | Man page |
| PmidFilter | Man page |
| PrositeFilter | Man page |
| RefseqFilter | Man page |
| TxChromFilter | Man page |
| TxStrandFilter | Man page |
| TxTypeFilter | Man page |
| WormbaseFilter | Man page |
| ZfinFilter | Man page |
| cds | Man page |
| cdsBy | Man page |
| cdsBy_tbl | Man page |
| cds_tbl | Man page |
| columns,src_organism-method | Man page |
| exons | Man page |
| exonsBy | Man page |
| exonsBy_tbl | Man page |
| exons_tbl | Man page |
| fiveUTRsByTranscript | Man page |
| fiveUTRsByTranscript_tbl | Man page |
| genes | Man page |
| genes_tbl | Man page |
| hg38light | Man page Source code |
| intronsByTranscript | Man page |
| intronsByTranscript,src_organism-method | Man page |
| intronsByTranscript_tbl | Man page Source code |
| is_scalar | Source code |
| is_scalar_character | Source code |
| keys,src_organism-method | Man page |
| keytypes,src_organism-method | Man page |
| mapIds,src_organism-method | Man page |
| mm10light | Man page Source code |
| orgPackageName,src_organism-method | Man page |
| promoters | Man page |
| promoters,src_organism-method | Man page |
| promoters_tbl | Man page Source code |
| select,src_organism-method | Man page |
| select_.tbl_organism | Man page Source code |
| select_tbl | Man page |
| seqinfo,src_organism-method | Man page |
| show,BasicFilter-method | Man page |
| show,CharacterFilter-method | Man page |
| show,IntegerFilter-method | Man page |
| src_organism | Man page Source code |
| src_tbls.src_organism | Man page Source code |
| src_ucsc | Man page Source code |
| supportedFilters,src_organism-method | Man page |
| supportedOrganisms | Man page Source code |
| tbl.src_organism | Man page Source code |
| threeUTRsByTranscript | Man page |
| threeUTRsByTranscript_tbl | Man page |
| transcripts | Man page |
| transcriptsBy | Man page |
| transcriptsBy_tbl | Man page |
| transcripts_tbl | Man page |
