Bioconductor/S4Arrays
Foundation of array-like containers in Bioconductor

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Vignettes
Functions
298
Source code
22
Man pages
13
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Bioconductor/S4Arrays: Foundation of array-like containers in Bioconductor
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API

API for Bioconductor/S4Arrays
Foundation of array-like containers in Bioconductor

Global functions
.NEW_read_block Source code
.OLD_read_block Source code
.abind_as_Array Source code
.aperm.ArbitraryArrayGrid Source code
.aperm.DummyArrayGrid Source code
.aperm.RegularArrayGrid Source code
.as.character.ArrayGrid Source code
.breakpoints2offsets Source code
.combine_dimnames Source code
.contact_author_msg1 Source code
.csplit_2Darray_data Source code
.default_abind Source code
.diff_dims Source code
.dims2ranges Source code
.drop_Array Source code
.extract_DataFrame_slice Source code
.extract_DataFrame_slice0 Source code
.extract_and_stitch_four_matrices Source code
.extract_and_stitch_two_1Darrays Source code
.extract_and_stitch_two_matrices_by_col Source code
.extract_and_stitch_two_matrices_by_row Source code
.extract_crazy_args Source code
.extract_data_frame_slice Source code
.extract_four_matrices Source code
.extract_objects Source code
.extract_two_1Darrays Source code
.extract_two_matrices_by_col Source code
.extract_two_matrices_by_row Source code
.format2 Source code
.format_as_character_matrix Source code
.format_as_character_vector Source code
.from_Array_to_array Source code
.from_Array_to_matrix Source code
.get_ArbitraryArrayGrid_max_spacings Source code
.get_ArbitraryArrayGrid_maxlength Source code
.get_ArbitraryArrayGrid_spacings_along Source code
.get_DataFrame_type Source code
.get_DummyArrayGrid_spacings_along Source code
.get_RegularArrayGrid_maxlength Source code
.get_RegularArrayGrid_spacings_along Source code
.intertwine_blocks Source code
.load_DelayedArray_for_read_block Source code
.load_SparseArray_for_read_block Source code
.major_minor_as_list Source code
.make_1Darray_names Source code
.make_colnames Source code
.make_rownames Source code
.make_subscripts_from_Nindex Source code
.normarg_Mindex Source code
.normarg_along Source code
.normarg_ind Source code
.normarg_ratio Source code
.normarg_rev_along Source code
.normargs_major_minor Source code
.onLoad Source code
.onUnload Source code
.prepare_1Darray_sample Source code
.prepare_2Darray_sample Source code
.print_1Darray_data Source code
.print_2D_slices Source code
.print_2Darray_data Source code
.print_array_data Source code
.print_nDarray_data Source code
.prod2 Source code
.rsplit_2Darray_data Source code
.set_Array_dim Source code
.showAsCell_array_like Source code
.split_2Darray_data Source code
.valid_tickmarks Source code
.validate_ArbitraryArrayGrid Source code
.validate_ArrayViewport Source code
.validate_DummyArrayGrid Source code
.validate_RegularArrayGrid Source code
.validate_SafeArrayViewport Source code
.validate_ranges_slot Source code
.wrap_subscripts Source code
ArbitraryArrayGrid Man page Source code
ArbitraryArrayGrid-class Man page
Array Man page
Array-class Man page
ArrayGrid Man page
ArrayGrid-class Man page
ArrayViewport Man page Source code
ArrayViewport-class Man page
DummyArrayGrid Man page Source code
DummyArrayGrid-class Man page
DummyArrayViewport Man page Source code
DummyArrayViewport-class Man page
L-index Man page
Lindex Man page
Lindex2Mindex Man page Source code
M-index Man page
Mindex Man page
Mindex2Lindex Man page Source code
N-index Man page
Nindex Man page
RegularArrayGrid Man page Source code
RegularArrayGrid-class Man page
SafeArrayViewport Man page
SafeArrayViewport-class Man page
[[,Array-method Man page
abind Man page
abind,ANY-method Man page
abind0 Source code
acbind Man page
acbind,ANY-method Man page
add_missing_dims Source code
aperm,ArbitraryArrayGrid-method Man page
aperm,DummyArrayGrid-method Man page
aperm,RegularArrayGrid-method Man page
aperm.ArbitraryArrayGrid Man page Source code
aperm.DummyArrayGrid Man page Source code
aperm.RegularArrayGrid Man page Source code
aperm2 Man page Source code
arbind Man page
arbind,ANY-method Man page
array selection Man page
array selections Man page
array_as_one_line_summary Source code
array_selection Man page
array_selections Man page
as.array,Array-method Man page
as.array.Array Man page Source code
as.character,Array-method Man page
as.character,ArrayGrid-method Man page
as.character.Array Man page Source code
as.character.ArrayGrid Man page Source code
as.complex,Array-method Man page
as.complex.Array Man page Source code
as.data.frame,Array-method Man page
as.data.frame.Array Man page Source code
as.integer,Array-method Man page
as.integer.Array Man page Source code
as.logical,Array-method Man page
as.logical.Array Man page Source code
as.matrix,Array-method Man page
as.matrix.Array Man page Source code
as.numeric,Array-method Man page
as.numeric.Array Man page Source code
as.raw,Array-method Man page
as.raw.Array Man page Source code
as.vector,Array-method Man page
as.vector.Array Man page Source code
bind arrays Man page
bind-arrays Man page
bplapply2 Source code
check_returned_array Source code
class:ArbitraryArrayGrid Man page
class:Array Man page
class:ArrayGrid Man page
class:ArrayViewport Man page
class:DummyArrayGrid Man page
class:DummyArrayViewport Man page
class:RegularArrayGrid Man page
class:SafeArrayViewport Man page
classNameForDisplay,ArrayViewport-method Man page
colsum Man page
colsum,ANY-method Man page
combine_array_objects Source code
combine_dimnames_along Source code
combine_dims_along Source code
compute_ugroup Source code
dim,ArbitraryArrayGrid-method Man page
dim,ArrayViewport-method Man page
dim,DummyArrayGrid-method Man page
dim,RegularArrayGrid-method Man page
dim-tuning-utils Man page
dim<-,Array-method Man page
dims Man page
dims,ArrayGrid-method Man page
downsample Man page
downsample,ArbitraryArrayGrid-method Man page
downsample,RegularArrayGrid-method Man page
drop,Array-method Man page
end,ArrayViewport-method Man page
expand_Nindex_RangeNSBS Source code
extract_Nindex_from_syscall Source code
extract_array Man page
extract_array,ANY-method Man page
extract_array,DataFrame-method Man page
extract_array,array-method Man page
extract_array,data.frame-method Man page
extract_array_by_Nindex Source code
extract_empty_array Source code
get_Nindex_lengths Source code
get_RegularArrayGrid_dim Source code
get_along Source code
get_dims_to_bind Source code
get_first_non_NULL_dimnames Source code
get_part_index Source code
get_rev_index Source code
get_user_option Source code
isEmpty,Array-method Man page
is_filled_with_zeros Source code
is_sparse Man page
is_sparse,ANY-method Man page
is_sparse,dgCMatrix-method Man page
is_sparse,dgRMatrix-method Man page
is_sparse,lgCMatrix-method Man page
is_sparse,lgRMatrix-method Man page
is_sparse<- Man page
length,Array-method Man page
lengths,ArrayGrid-method Man page
lengths,DummyArrayGrid-method Man page
load_package_gracefully Source code
makeNindexFromArrayViewport Man page Source code
make_one_zero_array Source code
make_string_from_ArrayViewport Source code
make_zero_filled_array Source code
mapToGrid Man page
mapToGrid,ArbitraryArrayGrid-method Man page
mapToGrid,RegularArrayGrid-method Man page
mapToRef Man page
mapToRef,ArbitraryArrayGrid-method Man page
mapToRef,RegularArrayGrid-method Man page
maxlength Man page
maxlength,ANY-method Man page
maxlength,ArbitraryArrayGrid-method Man page
maxlength,RegularArrayGrid-method Man page
normalizeSingleBracketSubscript2 Source code
normalize_Nindex Source code
normalize_dim_replacement_value Source code
normarg_array_type Source code
normarg_dim Source code
normarg_dimnames Source code
normarg_perm Source code
outer2 Source code
print_some_array_elements Source code
ranges,DummyArrayViewport-method Man page
ranges,SafeArrayViewport-method Man page
read_block Man page Source code
read_block_as_dense Man page
read_block_as_dense,ANY-method Man page
refdim Man page
refdim,ArbitraryArrayGrid-method Man page
refdim,ArrayViewport-method Man page
refdim,DummyArrayGrid-method Man page
refdim,RegularArrayGrid-method Man page
replace_by_Nindex Source code
rowsum Man page
seq2 Source code
set_dim Source code
set_dimnames Source code
set_or_check_dim Source code
set_user_option Source code
show,ArrayGrid-method Man page
show,ArrayViewport-method Man page
showAsCell,Array-method Man page
show_compact_array Source code
simple_abind Source code
simple_abind2 Source code
simplify_NULL_dimnames Source code
split_part_index Source code
start,ArrayViewport-method Man page
subscript_has_nogap Source code
subset_by_Nindex Source code
subset_dimnames_by_Nindex Source code
t,Array-method Man page
t.Array Man page Source code
to_linear_index Source code
tune_Array_dims Man page
tune_dimnames Source code
tune_dims Source code
type Man page
type,ANY-method Man page
type,DataFrame-method Man page
user_option_is_set Source code
validate_dim_slot Source code
validate_dimnames_slot Source code
validate_perm Source code
width,ArrayViewport-method Man page
write_block Man page
write_block,ANY-method Man page
Bioconductor/S4Arrays documentation built on May 1, 2024, 9:27 p.m.

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