sbsave-load-report: Save, load, and report on SOUNDWidget instances.

In Bioconductor/SOUNDBoard: Statistically-informed Multi-Omics Reports for Tumor and Other Boards

Description

These methods are usually created for the user with SOUNDWidget(), they are not created directly. Likewise methods are invoked by SOUNDBoard infrastructure, not by the user.

Usage

sbsave(x, file)

sbload(x, file)

sbreport(x)

## S4 method for signature 'tbl_board'
sbreport(x)

## S4 method for signature 'tbl_cases'
sbreport(x)

## S4 method for signature 'tbl_assay'
sbreport(x)

## S4 method for signature 'data.frame'
sbreport(x)

## S4 method for signature 'DataFrame'
sbreport(x)

## S4 method for signature 'gg'
sbreport(x)

## S4 method for signature 'iplotCorr'
sbreport(x)

## S4 method for signature 'HeatmapList'
sbreport(x)

## S4 method for signature 'rDGIdbResult'
sbreport(x)

Arguments

x	An instance derived from SOUNDWidget-class.
file	character(1) Location to or from which the instance x is to be saved / loaded.

Details

An sbsave(x, file) method saves x to file.

An sbload(x, file) method creates an instance of class x from location file. The instance x passed to the mehod is created by the default constructor of x, and does not contain the resource. A typical method will input the data resource <- ..., and then populate the instance initialize(x, resource = resource)

An sbreport(x) method creates output from x suitable for inclusion in a SOUNDBoard report.

Bioconductor/SOUNDBoard documentation built on May 6, 2019, 7:52 a.m.