Files in Bioconductor/UseBioconductor
Use R / Bioconductor for Sequence Analysis
.gitignore
DESCRIPTION
NAMESPACE
README.md
inst/doc/GRanges_and_GRangesList_slides.pdf
inst/extdata/E-MTAB-1147-toptable.csv
inst/extdata/csaw-data-filtered.Rds
inst/extdata/csaw-normfacs.Rds
inst/script/ChIPSeq/NFYA/csaw.R
inst/script/ChIPSeq/NFYA/preprocess_NFYA.R
inst/script/ChIPSeq/NFYA/setup.R
vignettes/A_Introduction.Rmd
vignettes/B_GenomicRanges.Rmd
vignettes/C_DifferentialExpression.Rmd
vignettes/D_MachineLearning.Rmd
vignettes/E_GeneSetEnrichment.Rmd
vignettes/F_ChIPSeq.Rmd
vignettes/GSEA/2012-07-06-Gentleman-GSEA.pdf
vignettes/GSEA/Category-ribosome.png
vignettes/GSEA/GSEA2011.pdf
vignettes/GSEA/GSEAlm.pdf
vignettes/GSEA/L8_Gene_Set_Testing.pdf
vignettes/GSEA/SPIA.pdf
vignettes/GSEA/SPIA.png
vignettes/GSEA/goseq.pdf
vignettes/GSEA/subramanian-F1-part.jpg
vignettes/GSEA/subramanian-F1.jpg
vignettes/GSEA/young-et-al-gb-2010-11-2-r14-2-cropped.pdf
vignettes/GSEA/young-et-al-gb-2010-11-2-r14-2-cropped.png
vignettes/GSEA/young-et-al-gb-2010-11-2-r14-2-cropped.tiff
vignettes/GSEA/young-et-al-gb-2010-11-2-r14-2.pdf
vignettes/I_LargeData.Rmd
vignettes/our_figures/ChIPSeq-workflow.png
vignettes/our_figures/ChIPSeq_nbt-1508-F1.jpg
vignettes/our_figures/FilesToPackages.png
vignettes/our_figures/GRanges.png
vignettes/our_figures/GRangesImplementation.png
vignettes/our_figures/GRangesList.png
vignettes/our_figures/GRangesListImplementation.png
vignettes/our_figures/RangeOperations.png
vignettes/our_figures/SequencingEcosystem.png
vignettes/our_figures/SummarizedExperiment.png
vignettes/our_figures/batch_effects_nrg2825-f2.jpg
vignettes/our_figures/copy_number_QC_2.png
vignettes/our_figures/journal.pcbi.1003118.t001.png
vignettes/our_figures/nmeth.3252-F2.jpg
vignettes/our_figures/nrg2825-f2.jpg
