seqinfo-method: Get seqinfo for VCF file
In Bioconductor/VariantAnnotation: Annotation of Genetic Variants
seqinfo R Documentation
Get seqinfo for VCF file
Description
Get seqinfo for VCF file
Usage
## S4 method for signature 'VcfFile'
seqinfo(x)
## S4 method for signature 'VcfFileList'
seqinfo(x)
Arguments
x
Either character(), VcfFile, or VcfFileList
Details
If a VcfFileThe file header is scanned an appropriate seqinfo
object in given. If a VcfFileList is given, all file headers are
scanned, and appropriate combined seqinfo object is given.
Value
Seqinfo object
Author(s)
Lori Shepherd
See Also
VcfFile, Seqinfo
Examples
fl <- system.file("extdata", "chr7-sub.vcf.gz", package="VariantAnnotation",
mustWork=TRUE)
vcf <- VcfFile(fl)
seqinfo(vcf)
Bioconductor/VariantAnnotation documentation built on March 28, 2024, 10 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| seqinfo | R Documentation |
Get seqinfo for VCF file
Description
Get seqinfo for VCF file
Usage
## S4 method for signature 'VcfFile'
seqinfo(x)
## S4 method for signature 'VcfFileList'
seqinfo(x)
Arguments
x |
Either character(), |
Details
If a VcfFileThe file header is scanned an appropriate seqinfo
object in given. If a VcfFileList is given, all file headers are
scanned, and appropriate combined seqinfo object is given.
Value
Seqinfo object
Author(s)
Lori Shepherd
See Also
VcfFile, Seqinfo
Examples
fl <- system.file("extdata", "chr7-sub.vcf.gz", package="VariantAnnotation",
mustWork=TRUE)
vcf <- VcfFile(fl)
seqinfo(vcf)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.