Files in Bioconductor/chipseq
chipseq: A package for analyzing chipseq data
.gitignore
DESCRIPTION
NAMESPACE
R/context.R
R/diffPeaks.R
R/filter.R
R/fraglen.R
R/intersect.R
R/islands.R
R/peaks.R
R/plots.R
R/subsets.R
TODO
data/cstest.rda
inst/Scripts/AntibodyComparison.Rnw
inst/Scripts/CTCFBindingSites.R
inst/Scripts/CTCF_ERV.R
inst/Scripts/CopyNumber.Rnw
inst/Scripts/Islands.Rnw
inst/Scripts/MyoD.R
inst/Scripts/PairedEndComparison.Rnw
inst/Scripts/PeakContextHuman.Rnw
inst/Scripts/PeakContextMouse.Rnw
inst/Scripts/PeakCutoff.Rnw
inst/Scripts/PeakModel.Rnw
inst/Scripts/PeakReproducibility.Rnw
inst/Scripts/PeaksByCopyNumber.Rnw
inst/Scripts/RateComparison.Rnw
inst/Scripts/ReadAndSave54.R
inst/Scripts/ReadAndSaveCTCF.R
inst/Scripts/ReadAndSaveData.R
inst/Scripts/ReadAndSaveSimulation.R
inst/Scripts/SolexaSim.R
inst/Scripts/abc.rda
inst/Scripts/antibody_comparison.R
inst/Scripts/dePeaks.R
inst/Scripts/diffpeak.R
inst/Scripts/diffpeaks.R
inst/Scripts/estimate_fragment_size.R
inst/Scripts/fibroblasts.R
inst/Scripts/figs/.gitignore
inst/Scripts/getIsochores.R
inst/Scripts/hmm.R
inst/Scripts/human-islands.R
inst/Scripts/isochore_comparison.R
inst/Scripts/isochores.mm9.rda
inst/Scripts/negbinomial.R
inst/Scripts/peakContext.R
inst/Scripts/peak_mle.R
inst/Scripts/poisson.R
inst/Scripts/simulate.R
inst/Scripts/singletons.Rnw
inst/Scripts/solexa54.R
man/chipseqFilter.Rd
man/coverageplot.Rd
man/cstest.Rd
man/diffPeakSummary.Rd
man/estimate.mean.fraglen.Rd
man/islandDepthPlot.Rd
man/laneSubsample.Rd
man/peakCutoff.Rd
man/peakSummary-methods.Rd
man/subsetSummary.Rd
src/rlesumprod.c
vignettes/Workflow.Rmd
