peakSummary-methods: Summarizing peak sets

peakSummary-methodsR Documentation

Summarizing peak sets

Description

Summarizes a set of peaks into a GRanges object with columns of statistics like the peak maxima and integrals (sums).

Usage

peakSummary(x, ...) 

Arguments

x

An object containing peaks, usually a RleViewsList.

...

Arguments to pass to methods

Value

A GRanges object of the peaks, with columns named max, maxpos (position of the maximum, centered), and sum.

See Also

view-summarization-methods in the IRanges package for view summarization methods like viewMaxs and viewSums.


Bioconductor/chipseq documentation built on May 4, 2024, 4:48 p.m.