API for Bioconductor/ensemblVEP
R Interface to Ensembl Variant Effect Predictor

Global functions
.checkLogicals	Source code
.checkNames	Source code
.colocatedVariants_setter	Source code
.dataformat_setter	Source code
.formatList	Source code
.getVepPath	Source code
.identifier_setter	Source code
.onAttach	Source code
.show	Source code
.test	Source code
.valid.VEPParam.advanced	Source code
.valid.VEPParam.basic	Source code
.valid.VEPParam.cache	Source code
.valid.VEPParam.colocated	Source code
.valid.VEPParam.database	Source code
.valid.VEPParam.dataformat	Source code
.valid.VEPParam.filterqc	Source code
.valid.VEPParam.identifier	Source code
.valid.VEPParam.input	Source code
.valid.VEPParam.output	Source code
.valid.VEPParam.scriptname	Source code
.valid.VEPParam.version	Source code
.version_error	Source code
VEPFlags	Man page Source code
VEPFlags-class	Man page
VEPParam	Man page Source code
VEPParam-class	Man page
VEPParam67-class	Man page
VEPParam73-class	Man page
VEPParam75-class	Man page
VEPParam77-class	Man page
VEPParam78-class	Man page
VEPParam82-class	Man page
VEPParam88-class	Man page
`scriptPath<-`	Source code
`version<-`	Source code
advanced	Man page
advanced,VEPParam-method	Man page
advanced<-	Man page
advanced<-,VEPParam-method	Man page
advancedOpts	Man page Source code
basic	Man page
basic,VEPParam-method	Man page
basic<-	Man page
basic<-,VEPParam-method	Man page
basicOpts	Man page Source code
cache	Man page
cache,VEPParam-method	Man page
cache<-	Man page
cache<-,VEPParam-method	Man page
cacheOpts	Man page Source code
class:VEPFlags	Man page
class:VEPParam	Man page
class:VEPParam67	Man page
class:VEPParam73	Man page
class:VEPParam75	Man page
class:VEPParam77	Man page
class:VEPParam78	Man page
class:VEPParam82	Man page
class:VEPParam88	Man page
colocatedVariants	Man page
colocatedVariants,VEPParam73-method	Man page
colocatedVariants,VEPParam75-method	Man page
colocatedVariants,VEPParam77-method	Man page
colocatedVariants,VEPParam78-method	Man page
colocatedVariants,VEPParam82-method	Man page
colocatedVariants,VEPParam88-method	Man page
colocatedVariants<-	Man page
colocatedVariants<-,VEPParam73-method	Man page
colocatedVariants<-,VEPParam75-method	Man page
colocatedVariants<-,VEPParam77-method	Man page
colocatedVariants<-,VEPParam78-method	Man page
colocatedVariants<-,VEPParam82-method	Man page
colocatedVariants<-,VEPParam88-method	Man page
colocatedVariantsOpts	Man page Source code
currentVEP	Man page Source code
database	Man page
database,VEPParam-method	Man page
database<-	Man page
database<-,VEPParam-method	Man page
databaseOpts	Man page Source code
dataformat	Man page
dataformat,VEPParam73-method	Man page
dataformat,VEPParam75-method	Man page
dataformat,VEPParam77-method	Man page
dataformat,VEPParam78-method	Man page
dataformat,VEPParam82-method	Man page
dataformat,VEPParam88-method	Man page
dataformat<-	Man page
dataformat<-,VEPParam73-method	Man page
dataformat<-,VEPParam75-method	Man page
dataformat<-,VEPParam77-method	Man page
dataformat<-,VEPParam78-method	Man page
dataformat<-,VEPParam82-method	Man page
dataformat<-,VEPParam88-method	Man page
dataformatOpts	Man page Source code
ensemblVEP	Man page
ensemblVEP,character-method	Man page
filterqc	Man page
filterqc,VEPParam-method	Man page
filterqc<-	Man page
filterqc<-,VEPParam-method	Man page
filterqcOpts	Man page Source code
flagOpts	Man page Source code
flags	Man page
flags,VEPFlags-method	Man page
flags<-	Man page
flags<-,VEPFlags-method	Man page
identifier	Man page
identifier,VEPParam73-method	Man page
identifier,VEPParam75-method	Man page
identifier,VEPParam77-method	Man page
identifier,VEPParam78-method	Man page
identifier,VEPParam82-method	Man page
identifier,VEPParam88-method	Man page
identifier<-	Man page
identifier<-,VEPParam73-method	Man page
identifier<-,VEPParam75-method	Man page
identifier<-,VEPParam77-method	Man page
identifier<-,VEPParam78-method	Man page
identifier<-,VEPParam82-method	Man page
identifier<-,VEPParam88-method	Man page
identifierOpts	Man page Source code
input	Man page
input,VEPParam-method	Man page
input<-	Man page
input<-,VEPParam-method	Man page
inputOpts	Man page Source code
oldRuntimeOptions	Man page
output	Man page
output,VEPParam-method	Man page
output<-	Man page
output<-,VEPParam-method	Man page
outputOpts	Man page Source code
parseCSQToGRanges	Man page
parseCSQToGRanges,VCF-method	Man page
parseCSQToGRanges,character-method	Man page
runtimeOptions	Man page
scriptPath	Man page Source code
scriptPath<-	Man page
show,VEPFlags-method	Man page
show,VEPParam-method	Man page
supportedVEP	Man page Source code
version	Man page Source code
version<-	Man page