eSetFilter: A function to filter an eSet object

In Bioconductor/genefilter: genefilter: methods for filtering genes from high-throughput experiments

A function to filter an eSet object

Description

Given a Bioconductor's ExpressionSet object, this function filters genes using a set of selected filters.

Usage

eSetFilter(eSet)
getFilterNames()
getFuncDesc(lib = "genefilter", funcs = getFilterNames())
getRdAsText(lib)
parseDesc(text)
parseArgs(text)
showESet(eSet)
setESetArgs(filter)
isESet(eSet)

Arguments

eSet	eSet an ExpressionSet object
lib	lib a character string for the name of an R library where functions of interests reside
funcs	funcs a vector of character strings for names of functions of interest
text	text a character of string from a filed (e. g. description, argument, ..) filed of an Rd file for a fucntion
filter	filter a character string for the name of a filter function

Details

These functions are deprecated. Please use the ‘iSee’ package instead.

A set of filters may be selected to filter genes in through each of the filters in the order the filters have been selected

Value

A logical vector of length equal to the number of rows of 'expr'. The values in that vector indicate whether the corresponding row of 'expr' passed the set of filter functions.

Author(s)

Jianhua Zhang

See Also

genefilter

Examples

 if( interactive() ) {
   data(sample.ExpressionSet)      
   res <- eSetFilter(sample.ExpressionSet)
 }

Bioconductor/genefilter documentation built on Nov. 2, 2024, 7:24 a.m.