SE: Example gene-expression dataset for DaMiRseq package
In BioinfoMonzino/DaMiRseq: Data Mining for RNA-seq data: normalization, feature selection and classification
Description
Usage
Format
Value
Description
A dataset with count matrix to test several DaMiRseq functions.
To show package functionality in a reasonably execution time,
sample data are a subset of Genotype-Tissue Expression (GTEx)
RNA-Seq database (dbGap Study Accession: phs000424.v6.p1). Samples incude
20 Anterior Cingulate Cortex (ACC) tissues and 20 Frontal Cortex (FC) tissues.
21363 genes have been preaviously selected to have 5 read counts
in at least 60
Usage
1
Format
A SummarizedExperiment object containing an assay of
21363 randomly selected genes (rows) and 40 samples (columns)
and a colData with 5 variables
Value
An example dataset for DaMiRseq package
BioinfoMonzino/DaMiRseq documentation built on Aug. 22, 2021, 3:11 p.m.
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Description Usage Format Value
Description
A dataset with count matrix to test several DaMiRseq functions. To show package functionality in a reasonably execution time, sample data are a subset of Genotype-Tissue Expression (GTEx) RNA-Seq database (dbGap Study Accession: phs000424.v6.p1). Samples incude 20 Anterior Cingulate Cortex (ACC) tissues and 20 Frontal Cortex (FC) tissues. 21363 genes have been preaviously selected to have 5 read counts in at least 60
Usage
1 |
Format
A SummarizedExperiment object containing an assay of 21363 randomly selected genes (rows) and 40 samples (columns) and a colData with 5 variables
Value
An example dataset for DaMiRseq package
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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