TCGAbiolinksGUI-data: Auxiliary data for TCGAbiolinksGUI package.

In BioinformaticsFMRP/TCGAbiolinksGUI.data: Data for the TCGAbiolinksGUI package

Auxiliary data for TCGAbiolinksGUI package.

Description

Package: TCGAbiolinksGUI.data provide the necessary data for TCGAbiolinksGUI glioma classifier menu. It includes the following objects:

glioma.gcimp.model

A train model for GCIMP DNA methylation signatures.

glioma.idhwt.model

A train model for IDHwt DNA methylation signatures

glioma.idhmut.model

A train model for IDHmut DNA methylation signatures

glioma.idh.model

A train model for IDH DNA methylation signatures

probes2rm

List of probes that should be removed from EPIC array due to different versions of the platform.
Source: https://support.illumina.com/downloads/infinium-methylationepic-v1-0-product-files.html

maf.tumor

TCGA projects with open MAF files retrieved from the NCI's Genomic Data Commons (GDC).
Source: https://gdc-docs.nci.nih.gov/Data/Release_Notes/Manifests/GDC_open_MAFs_manifest.txt

GDCdisease

The NCI's Genomic Data Commons (GDC) projects list

BioinformaticsFMRP/TCGAbiolinksGUI.data documentation built on March 31, 2022, 4:25 p.m.