In BioinformaticsFMRP/TCGAbiolinksGUI: "TCGAbiolinksGUI: A Graphical User Interface to analyze cancer molecular and clinical data"
Case: Integration of DNA methylation and gene expression for TCGA adrenal cortical carcinoma (ACC) samples
In this case study, we downloaded DNA methylation and gene expression for TCGA adrenal cortical carcinoma (ACC) samples, executed the Differentially methylated region (DMR) analysis and Differential Expression Analysis (DEA), then both results were integrated into a starburst plot.
Tutorial Video: Integration of methylation and expression for TCGA adrenal cortical carcinoma (ACC) samples - (http://www.youtube.com/watch?v=RcXibjFanH4)
Case: Executing ELMER analysis on TCGA Kidney renal clear cell carcinoma (KIRC) samples
In this case, we downloaded DNA methylation and gene expression data for TCGA Kidney renal clear cell carcinoma (KIRC) samples. Then, this data is used to execute ELMER analysis.
For a more detailed example, please check our Bioc2017 workshop.
Tutorial Video: Executing Elmer analysis on TCGA Kidney renal clear cell carcinoma (KIRC) samples - (http://www.youtube.com/watch?v=EhGw1aF-2_c)
BioinformaticsFMRP/TCGAbiolinksGUI documentation built on Aug. 10, 2021, 11:46 p.m.
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Case: Integration of DNA methylation and gene expression for TCGA adrenal cortical carcinoma (ACC) samples
In this case study, we downloaded DNA methylation and gene expression for TCGA adrenal cortical carcinoma (ACC) samples, executed the Differentially methylated region (DMR) analysis and Differential Expression Analysis (DEA), then both results were integrated into a starburst plot.
Case: Executing ELMER analysis on TCGA Kidney renal clear cell carcinoma (KIRC) samples
In this case, we downloaded DNA methylation and gene expression data for TCGA Kidney renal clear cell carcinoma (KIRC) samples. Then, this data is used to execute ELMER analysis.
For a more detailed example, please check our Bioc2017 workshop.
Tutorial Video: Executing Elmer analysis on TCGA Kidney renal clear cell carcinoma (KIRC) samples - (http://www.youtube.com/watch?v=EhGw1aF-2_c)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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