getA: 'getA' - Extracts the "a" parameter from occupancy model...

In BiologicalRecordsCentre/wrappeR: A Pipeline for Biodiversity Indicators

getA - Extracts the "a" parameter from occupancy model outputs.

Description

"a" is the occupancy on the logit scale Currently this only works for Regions. For the whole domain some recoding and calculation would be required. This code has been copied from tempSampPost(). There is potential redundancy that could be streamlined at a later date The data extracted this way are what we need for the bma method

Usage

getA(
  indata = "../data/model_runs/",
  keep,
  REGION_IN_Q = "a",
  group_name = "",
  combined_output = TRUE,
  max_year_model = NULL,
  min_year_model = NULL,
  write = FALSE,
  minObs = NULL,
  t0,
  tn,
  parallel = TRUE,
  n.cores = NULL
)

BiologicalRecordsCentre/wrappeR documentation built on May 3, 2023, 2:36 a.m.