Files in BiostatQian/ASAFE
Ancestry Specific Allele Frequency Estimation
DESCRIPTION
NAMESPACE
R/algorithm_1snp.R
R/algorithm_1snp_wrapper.R
R/change_ancestry.R
R/draw_allele_given_anc.R
R/em.R
R/estep.R
R/get_errors_1_scenario.R
R/get_errors_summary_stats_1_scenario.R
R/get_mean_sd_error_anc.R
R/get_mean_sd_error_anc_bin.R
R/get_results_error.R
R/get_scenario_errors.R
R/get_true_freqs_1snp.R
R/increment_n.R
R/mstep.R
R/nudge.R
R/sample_ancestry.R
README
build/vignette.rds
data/adm_ancestries.rda
data/adm_estimates.rda
data/adm_genotypes.rda
data/ancestral_freqs.rda
data/datalist
inst/ASAFE_Visual.pdf
inst/NEWS
inst/doc/ASAFE.R
inst/doc/ASAFE.Rmd
inst/doc/ASAFE.pdf
inst/extdata/error_summary_stats_error_0.07_jobID_30146.txt
inst/extdata/error_summary_stats_error_0_jobID_30146.txt
inst/scripts/bgl_then_rfmix.sh
inst/scripts/run.sh
inst/scripts/simulate.R
man/adm_ancestries.Rd
man/adm_estimates.Rd
man/adm_genotypes.Rd
man/algorithm_1snp.Rd
man/algorithm_1snp_wrapper.Rd
man/ancestral_freqs.Rd
man/get_mean_sd_error_anc.Rd
tests/testthat.R
tests/testthat/test_algorithm_1snp.R
tests/testthat/test_algorithm_1snp_wrapper.R
tests/testthat/test_change_ancestry.R
tests/testthat/test_draw_allele_given_anc.R
tests/testthat/test_em.R
tests/testthat/test_estep.R
tests/testthat/test_get_errors_1_scenario.R
tests/testthat/test_get_errors_summary_stats_1_scenario.R
tests/testthat/test_get_mean_sd_error_anc.R
tests/testthat/test_get_mean_sd_error_anc_bin.R
tests/testthat/test_get_results_error.R
tests/testthat/test_get_scenario_errors.R
tests/testthat/test_get_true_freqs_1snp.R
tests/testthat/test_increment_n.R
tests/testthat/test_mstep.R
tests/testthat/test_nudge.R
tests/testthat/test_sample_ancestry.R
vignettes/ASAFE.Rmd
