NEWS.md

In Bisaloo/fundiversity: Easy Computation of Functional Diversity Indices

fundiversity 1.1.0

Minor changes

• Change vignette names and indexing so that they are ordered similarly on the pkgdown website, on CRAN, and using vignette. Vignettes are renamed fundiversity_X-topic.Rmd but the overview vignette fundiversity.Rmd.
• Fully replace all URLs still pointing to https://github.com/bisaloo/fundiversity to https://github.com/funecology/fundiversity
• Update documentation of fd_*() functions for edge cases and arguments.
• Fix unuseful argument in remove_species_without_traits() that would display FALSE at the end of each message.
• Update parallel vignette with list of parallelizable function at the top and explain that vignette is pre-computed.
• Update performance/benchmark vignette to reflect actually ran benchmark in manuscript.

Bug fixes

• Fix a bug in the computation of fd_fdis() because of a misplaced square. NB: All FDis computation done with it to this day were wrong.

fundiversity 1.0.0

Internal changes

• Unit tests for non-continuous traits for all functions.
• Correct all URLs of the package

Minor changes

• fundiversity functions now error when used with non-continuous trait data
• future_apply() and future_lapply() calls in fd_fdis(), fd_fdiv(), fd_ric(), fd_fric_intersect() and fd_feve() now use future.globals = FALSE, thus making the internal code less error-prone and faster in parallel settings.

Major changes

• Add a vignette on numerical correctness named correctness, accessible with vignette("correctness", package = "fundiversity").

fundiversity 0.2.1

Internal changes

• Unit tests have been updated to work with testthat 3.1.0

fundiversity 0.2.0

Major changes

• There is a new function fd_fric_intersect() to compute the intersection of convex hulls across pairs of sites.
• There is a new function fd_fdis to compute Functional Dispersion FDis.
• fd_fdiv(), fd_feve(), fd_fdis(), fd_fric() can now be computed in parallel with the future framework. Please refer to the parallelization vignette for more information.
• The convex hull computation in fd_fdiv(), fd_fric(), and fd_fric_intersect() is now cached thanks to the memoise package to speed up repeated runs. This behavior can be disabled by running options(fundiversity.memoise = FALSE) at the start of your R session.

fundiversity 0.0.1

• First CRAN release (01751f1) :tada:!
• Added a NEWS.md file to track changes to the package.

Bisaloo/fundiversity documentation built on April 4, 2024, 12:24 a.m.