make_resids: Run survival analysis and compute residuals on a phenotype...

In Blue-Lab/blPipeline: Blue Lab Association Pipeline

Run survival analysis and compute residuals on a phenotype dataframe

Description

Run survival analysis and compute residuals on a phenotype dataframe

Usage

make_resids(
  x,
  age,
  status,
  surv_name = "surv",
  covars,
  keep_reg = FALSE,
  mgl_name = "martingale",
  dev_name = "devres",
  weighted = FALSE
)

Arguments

x	A dataframe with age, status and covariate variables
age	The name of the age variable
status	The name of the event variable
surv_name	The name of the survival variable in the returned dataframe
covars	The names of the covariates for the Cox regression
keep_reg	Indicator for the function to return the Cox regression object
mgl_name	The name of the Martingale residual variable in the returned dataframe
dev_name	The name of the deviance residual variable in the returned dataframe
weighted	Passed as the argument weighted to residuals()

Blue-Lab/blPipeline documentation built on May 12, 2022, 5:10 a.m.