Awatea2OM: Reads MCMC estimates from Awatea (Paul Starr) processed r...
In Blue-Matter/MSEtool: Management Strategy Evaluation Toolkit

Awatea2OM

R Documentation

Reads MCMC estimates from Awatea (Paul Starr) processed r file structure into an operating model

Description

A function that generates an operating model from the MCMC samples of an Awatea model. Code optimized for the BC Pacific ocean perch assessment (Haigh et al. 2018).

Usage

Awatea2OM(
  AwateaDir,
  nsim = 48,
  proyears = 50,
  Name = "OM made by Awatea2OM",
  Source = "No source provided",
  Author = "No author provided",
  verbose = TRUE
)

Arguments

`AwateaDir`	A folder with Awatea files
`nsim`	The number of simulations
`proyears`	The number of projection years for the MSE
`Name`	The name of the operating model
`Source`	Reference to assessment documentation e.g. a url
`Author`	Who did the assessment
`verbose`	Return detailed messages?

Details

This function averages biological parameters across sex and then sends arrays to VPA2OM, assumes unfished status (B/B0 = 1) in the first year, and assumes a single fishing fleet.

Author(s)

Q. Huynh and T. Carruthers

References

Haigh, R., et al. 2018. Stock assessment for Pacific Ocean Perch (Sebastes alutus) in Queen Charlotte Sound, British Columbia in 2017. Canadian Science Advisory Secretariat (CSAS) Research Document 2018/038. 232 pp. https://www.dfo-mpo.gc.ca/csas-sccs/Publications/ResDocs-DocRech/2018/2018_038-eng.html

Blue-Matter/MSEtool documentation built on Nov. 22, 2024, 8:23 p.m.