Man pages for BodenmillerGroup/SingleCellMapper
Visualization of highly multiplexed imaging data in R
| compImage | Performs channel compensation on multi-channel images |
| CytoImageList | S4 class for list of images |
| CytoImageList-manipulation | Manipulating CytoImageList objects |
| CytoImageList-naming | Getting and setting the channel and image names |
| CytoImageList-subsetting | General subsetting methods for CytoImageList objects |
| cytomapperShiny | Shiny application to visualise gated cells on images |
| loadImages | Read images into CytoImageList object |
| measureObjects | Compute morphological and intensity features from objects on... |
| pancreasImages | Example CytoImageList object of image files |
| pancreasMasks | Example CytoImageList object of segmentation masks |
| pancreasSCE | Example SingleCellExperiment object |
| plotCells | Function to visualize cell-level information on segmentation... |
| plotPixels | Function to visualize pixel-level information of... |
| plotting-param | Further plotting parameters for the cytomapper package |
