API for BodenmillerGroup/SingleCellMapper
Visualization of highly multiplexed imaging data in R
| Global functions | |
|---|---|
| .ImageList_validity | Source code |
| .addPlots_sidebar | Source code |
| .addPlots_tab1 | Source code |
| .addPlots_tab2 | Source code |
| .add_h5 | Source code |
| .brushObject | Source code |
| .brushRange | Source code |
| .clearBrush | Source code |
| .clearObjects | Source code |
| .colourImageByFeature | Source code |
| .colourMaskByFeature | Source code |
| .colourMaskByMeta | Source code |
| .createColourVector | Source code |
| .createImageExpression | Source code |
| .createImageSelection | Source code |
| .createScatter | Source code |
| .create_colours | Source code |
| .create_general_observer | Source code |
| .create_interactive_observer | Source code |
| .create_updateSelectizeInput | Source code |
| .cytomapper_body | Source code |
| .cytomapper_header | Source code |
| .cytomapper_server | Source code |
| .cytomapper_sidebar | Source code |
| .displayImages | Source code |
| .downloadSelection | Source code |
| .general_help | Source code |
| .minMaxScaling | Source code |
| .mixColours | Source code |
| .outlineImageByMeta | Source code |
| .plotImageTitle | Source code |
| .plotLegend | Source code |
| .plotScaleBar | Source code |
| .plotScatter | Source code |
| .plotViolin | Source code |
| .plottingParam | Source code |
| .selectColours | Source code |
| .select_contrast | Source code |
| .select_markers | Source code |
| .valid.Channel.setting | Source code |
| .valid.Image.setting | Source code |
| .valid.backgroundcolour | Source code |
| .valid.bcg | Source code |
| .valid.colour | Source code |
| .valid.colour_by | Source code |
| .valid.compImage.input | Source code |
| .valid.features | Source code |
| .valid.image | Source code |
| .valid.imagetitle | Source code |
| .valid.legendparam | Source code |
| .valid.loadImage.input | Source code |
| .valid.mask | Source code |
| .valid.matchObjects.measureObjects | Source code |
| .valid.matchObjects.plotCells | Source code |
| .valid.matchObjects.plotPixels | Source code |
| .valid.missingcolour | Source code |
| .valid.outline_by | Source code |
| .valid.saveplot | Source code |
| .valid.scalebar | Source code |
| .valid.sce | Source code |
| .valid.sce.shiny | Source code |
| CytoImageList | Man page Source code |
| CytoImageList-class | Man page |
| CytoImageList-manipulation | Man page |
| CytoImageList-naming | Man page |
| CytoImageList-subsetting | Man page |
| [<-,CytoImageList,ANY,ANY,CytoImageList-method | Man page |
| [[<-,CytoImageList,ANY,ANY-method | Man page |
| channelNames | Man page |
| channelNames,CytoImageList-method | Man page |
| channelNames<- | Man page |
| channelNames<-,CytoImageList-method | Man page |
| coerce,ANY,CytoImageList-method | Man page |
| coerce,list,CytoImageList-method | Man page |
| compImage | Man page Source code |
| cytomapperShiny | Man page Source code |
| getChannels | Man page |
| getChannels,CytoImageList-method | Man page |
| getImages | Man page |
| getImages,CytoImageList-method | Man page |
| loadImages | Man page Source code |
| measureObjects | Man page Source code |
| mergeChannels | Man page Source code |
| names,CytoImageList-method | Man page |
| names<-,CytoImageList-method | Man page |
| normImages | Source code |
| normalize | Man page |
| normalize,CytoImageList-method | Man page |
| pancreasImages | Man page |
| pancreasMasks | Man page |
| pancreasSCE | Man page |
| plotCells | Man page Source code |
| plotPixels | Man page Source code |
| plotting-param | Man page |
| scaleImages | Man page |
| scaleImages,CytoImageList-method | Man page |
| setChannels<- | Man page |
| setChannels<-,CytoImageList-method | Man page |
| setImages<- | Man page |
| setImages<-,CytoImageList-method | Man page |
| show,CytoImageList-method | Man page |
