Man pages for BodenmillerGroup/bbRtools
A helper package to for cyTOF R scripts
| calcTSNE | Calculates the bhSNE from a melted data table |
| censor_dat | censor dat remove the outliers on the upper side by capping... |
| do_flowsom | Run flowsom on a melted data table |
| do_phenograph | Make a phenograph from a melted dataframe |
| flowFrame2dt | Converts FlowFrame to data table |
| get_cormat | Calculate a correlation matrix from a data table |
| getInfoFromFileList | Parses a list of strings and gets the corresponding... |
| getInfoFromString | Generates a metadata table from a |
| getPerc | calculate percentiles For each value in x calculate which... |
| getStats | calculate stats |
| loadConvertMultiFCS | Loads multiple FCS files at once |
| loadFCS | Wrapper for flow Core read.FCS |
| load_json_graph | Loads a Cytoscape JSON as an igraph graph |
| map2colormap | Maps a vector x to a colormap and returns the RGB values |
| plot_sumStats | plot summary stats |
