pancreasMasks: Example CytoImageList object of segmentation masks

pancreasMasksR Documentation

Example CytoImageList object of segmentation masks

Description

This CytoImageList object contains single-channel images representing the segmentation masks after preprocessing of imaging mass cytometry data. The data is part of a imaging mass cytometry study on the progression of Type 1 diabetes and contains pancreas cells.

Usage

pancreasMasks

Format

A CytoImageList object containing 3 Image objects with 1 channel each. These images are the result to segmentation and associated to the images stored in the pancreasImages object. Pixel values indicate the numeric cell identifier while a value of 0 represents the image background.

References

Damond, N. et al., A Map of Human Type 1 Diabetes Progression by Imaging Mass Cytometry, Cell Metabolism 29:3, 2019


BodenmillerGroup/cytomapper documentation built on March 24, 2024, 10:21 p.m.