Files in Bohdan-Khomtchouk/geneXtendeR
Optimized Functional Annotation Of ChIP-seq Data
.gitignore
DESCRIPTION
NAMESPACE
R/allPeakLengths.r
R/annotate.r
R/annotate_n.r
R/barChart.r
R/cumlinePlot.r
R/diffGO.R
R/distinct.r
R/geneXtender.r
R/gene_annotate.r
R/gene_lookup.r
R/hotspotPlot.r
R/linePlot.r
R/makeNetwork.r
R/makeWordCloud.r
R/meanPeakLength.r
R/meanPeakLengthPlot.r
R/peakLengthBoxplot.r
R/peak_input_docs.r
R/peaksInput.r
R/peaksMerge.r
R/plotWordFreq.r
R/rat.r
README.md
data/datalist
data/rat.rda
data/samplepeaksinput.rda
inst/CITATION
inst/doc/geneXtendeR.pdf
inst/extdata/cisgenomeischemiapeaks.txt
inst/extdata/sicerischemiapeaks.txt
inst/extdata/significantpeaksfile.txt
inst/extdata/somepeaksfile.txt
inst/extdata/totalpeaksfile.txt
man/allPeakLengths.Rd
man/annotate.Rd
man/annotate_n.Rd
man/barChart.Rd
man/cumlinePlot.Rd
man/diffGO.Rd
man/distinct.Rd
man/dot-geneXtender.Rd
man/gene_annotate.Rd
man/gene_lookup.Rd
man/hotspotPlot.Rd
man/linePlot.Rd
man/makeNetwork.Rd
man/makeWordCloud.Rd
man/meanPeakLength.Rd
man/meanPeakLengthPlot.Rd
man/peakLengthBoxplot.Rd
man/peaksInput.Rd
man/peaksMerge.Rd
man/plotWordFreq.Rd
man/rat.Rd
man/samplepeaksinput.Rd
src/annotate.c
src/extract_number.c
src/extract_peaks.c
tests/testthat.R
tests/testthat/Rplots.pdf
tests/testthat/test-allPeakLengths.R
tests/testthat/test-annotate.R
tests/testthat/test-annotate_n.R
tests/testthat/test-barChart.R
tests/testthat/test-cumlinePlot.R
tests/testthat/test-diffGO.R
tests/testthat/test-distinct.R
tests/testthat/test-geneXtender.R
tests/testthat/test-gene_annotate.R
tests/testthat/test-gene_lookup.R
tests/testthat/test-hotspotPlot.R
tests/testthat/test-linePlot.R
tests/testthat/test-makeNetwork.R
tests/testthat/test-makeWordCloud.R
tests/testthat/test-meanPeakLength.R
tests/testthat/test-peaksInput.R
vignettes/figures/Ischemia_violin_plot.png
vignettes/figures/cisgenomerun.png
vignettes/figures/geneXtendeRlogo.png
vignettes/figures/mousegeneann2000.png
vignettes/figures/mousemtor.png
vignettes/figures/ndimen.png
vignettes/figures/sicerrun.png
vignettes/figures/vignette_annotate_2400.PNG
vignettes/figures/vignette_annotate_3500_3.png
vignettes/figures/vignette_gene_annotate_2400.PNG
vignettes/figures/vignette_gene_annotate_example.png
vignettes/figures/vignette_gene_lookup_zbtb16_19.png
vignettes/figures/vignette_network_Gprc5b.png
vignettes/figures/vignette_network_birdseye.png
vignettes/figures/vignette_wordcloud.png
vignettes/figures/vignette_wordfreq.png
vignettes/figures/workflow.pdf
vignettes/geneXtendeR.Rnw
vignettes/somepeaksfile.txt
