Files in Bohdan-Khomtchouk/geneXtendeR

Optimized Functional Annotation Of ChIP-seq Data

.gitignore

DESCRIPTION

NAMESPACE

R/allPeakLengths.r R/annotate.r R/annotate_n.r R/barChart.r R/cumlinePlot.r R/diffGO.R R/distinct.r R/geneXtender.r R/gene_annotate.r R/gene_lookup.r R/hotspotPlot.r R/linePlot.r R/makeNetwork.r R/makeWordCloud.r R/meanPeakLength.r R/meanPeakLengthPlot.r R/peakLengthBoxplot.r R/peak_input_docs.r R/peaksInput.r R/peaksMerge.r R/plotWordFreq.r R/rat.r README.md

data/datalist

data/rat.rda

data/samplepeaksinput.rda

inst/CITATION

inst/doc/geneXtendeR.pdf

inst/extdata/cisgenomeischemiapeaks.txt

inst/extdata/sicerischemiapeaks.txt

inst/extdata/significantpeaksfile.txt

inst/extdata/somepeaksfile.txt

inst/extdata/totalpeaksfile.txt

man/allPeakLengths.Rd man/annotate.Rd man/annotate_n.Rd man/barChart.Rd man/cumlinePlot.Rd man/diffGO.Rd man/distinct.Rd man/dot-geneXtender.Rd man/gene_annotate.Rd man/gene_lookup.Rd man/hotspotPlot.Rd man/linePlot.Rd man/makeNetwork.Rd man/makeWordCloud.Rd man/meanPeakLength.Rd man/meanPeakLengthPlot.Rd man/peakLengthBoxplot.Rd man/peaksInput.Rd man/peaksMerge.Rd man/plotWordFreq.Rd man/rat.Rd man/samplepeaksinput.Rd

src/annotate.c

src/extract_number.c

src/extract_peaks.c

tests/testthat.R tests/testthat/Rplots.pdf tests/testthat/test-allPeakLengths.R tests/testthat/test-annotate.R tests/testthat/test-annotate_n.R tests/testthat/test-barChart.R tests/testthat/test-cumlinePlot.R tests/testthat/test-diffGO.R tests/testthat/test-distinct.R tests/testthat/test-geneXtender.R tests/testthat/test-gene_annotate.R tests/testthat/test-gene_lookup.R tests/testthat/test-hotspotPlot.R tests/testthat/test-linePlot.R tests/testthat/test-makeNetwork.R tests/testthat/test-makeWordCloud.R tests/testthat/test-meanPeakLength.R tests/testthat/test-peaksInput.R

vignettes/figures/Ischemia_violin_plot.png

vignettes/figures/cisgenomerun.png

vignettes/figures/geneXtendeRlogo.png

vignettes/figures/mousegeneann2000.png

vignettes/figures/mousemtor.png

vignettes/figures/ndimen.png

vignettes/figures/sicerrun.png

vignettes/figures/vignette_annotate_2400.PNG

vignettes/figures/vignette_annotate_3500_3.png

vignettes/figures/vignette_gene_annotate_2400.PNG

vignettes/figures/vignette_gene_annotate_example.png

vignettes/figures/vignette_gene_lookup_zbtb16_19.png

vignettes/figures/vignette_network_Gprc5b.png

vignettes/figures/vignette_network_birdseye.png

vignettes/figures/vignette_wordcloud.png

vignettes/figures/vignette_wordfreq.png

vignettes/figures/workflow.pdf

vignettes/geneXtendeR.Rnw

vignettes/somepeaksfile.txt

Bohdan-Khomtchouk/geneXtendeR documentation built on June 9, 2019, 2:53 a.m.