korg: Mapping data on KEGG species code and corresponding...

In BowenNCSU/pathview: a tool set for pathway based data integration and visualization

Description

Data on KEGG species, including KEGG code, scientific name, common name, corresponding gene ID types, and gene annotation package names in Bioconductor

Usage

data(korg)
data(bods)

Format

korg is a character matrix of ~3000 rows and 6 columns. First 3 columns are KEGG species code, scientific name and common name, followed columns on gene ID types used for each species: entrez.gnodes ("1" or "0", whether EntrezGene is the default gene ID) and representative KEGG gene ID and EntrezGene ID.

bods is a character matrix of 19 rows and 3 columns on the mapping between gene annotation package names in Bioconductor, common name and KEGG code of most common research species.

Source

http://www.genome.jp/kegg-bin/get_htext?br08601.keg

http://bioconductor.org/packages/release/BiocViews.html#___OrgDb

Examples

data(korg)
data(bods)
head(korg)
head(bods)

BowenNCSU/pathview documentation built on May 24, 2019, 7:36 a.m.