apLCMS.EIC.plot: apLCMS.EIC.plot

In BowenNCSU/xMSanalyzer: xMSanalyzer: R package for data analysis, comparison, and annotation of metabolomics data.

Description

Modified version of the EIC plot function in apLCMS

Usage

apLCMS.EIC.plot(aligned, rows = NA, colors = NA, transform = "none", subset = NA, 
    minrt = NA, maxrt = NA, min.run = 12, min.pres = 0.5, max.spline.time.points = 1000)

Arguments

aligned	Rda object from apLCMS
rows	feature row indices eg: c(10,35)
colors	color vector eg: c("red","green")
transform	Tranformation method eg: "none", "log", "sqrt", or "cuberoot"
subset	subset of profiles for which to plot the EICs eg: c(1:6)
minrt	minimum retention limit in EIC plot eg:30
maxrt	maximum retention time limit in EIC plot eg: 300
min.run	same as apLCMS.align
min.pres	same as apLCMS.align
max.spline.time.points	Maximum number of time points to use for interpolation spline eg: 1000

Details

This function is modified version of the EIC.plot function in apLCMS. Users can define the time range for plotting EICs.

Author(s)

Karan Uppal <[e-mail]>; Tianwei Yu

BowenNCSU/xMSanalyzer documentation built on May 24, 2019, 7:36 a.m.