bioMap: bioMap

In BradHubley/SpatialHub: Survey Design and Spatial Analysis of Fisheries Data

bioMap

Description

a customizable mapping function that uses PBSmapping to plot fisheries data, bathymetry and mangement boundaries.

Usage

bioMap(
  area = "custom",
  ylim = c(40, 52),
  xlim = c(-74, -47),
  mapRes = "HR",
  land.col = "wheat",
  title = "",
  nafo = NULL,
  boundaries = "LFAs",
  isobaths = seq(100, 1000, 100),
  bathcol = rgb(0, 0, 1, 0.1),
  points.lst = NULL,
  pt.cex = 1,
  lines.lst = NULL,
  poly.lst = NULL,
  contours = NULL,
  image.lst = NULL,
  color.fun = tim.colors,
  zlim,
  grid = NULL,
  stippling = F,
  lol = F,
  labels = "lfa",
  labcex = 1.5,
  LT = T,
  plot.rivers = T,
  addsubareas = F,
  subsetSurveyStrata = NULL,
  addbasemap = F,
  ...
)

Arguments

area	= 'custom' where xlim & ylim are specified or select from area list below
ylim	= y limits
xlim	= x limits
mapRes	= coastline detail ('LR' = low resolution, 'MR' = medium resolution, 'HR' = high resolution, 'UR' = ultra resolution)
land.col	= colour for the land
title	= plot title
nafo	= undocumented
boundaries	= for ploting specific management boundaries ("lobster", "scallop", "snowcrab", "SummerSurveyStrata", "GeorgesSurveyStrata", "AmericanSurveyStrata")
isobaths	= plots bathymetry lines for specified depths from topex data
bathcol	= isobath line color, default is transparent blue
points.lst	= points to overlay on map in PBSmapping format - list with 2 elements: 1st element is eventSet (EID, POS, X, Y), 2nd element is eventData (EID, pch, col, etc.)
pt.cex	= undocumented
lines.lst	= lines to overlay on map in PBSmapping format - list with 2 elements: 1st element is polySet (PID, SID, POS, X, Y), 2nd element is polyData (PID, SID, lty, col, etc.)
poly.lst	= polygons to overlay on map in PBSmapping format - list with 2 elements: 1st element is polySet (PID, SID, POS, X, Y), 2nd element is polyData (PID, SID, border, col, etc.)
contours	= plots overlaping polygons as contours (same format as poly.lst)
image.lst	= image to overlay on map - list with 3 elements (x, y, z), 'bathymetry' produces image from bathymetry data
color.fun	= color function for image
zlim	= zlim for image
grid	= size of grid in degrees, default is no grid
stippling	= adds stippling to land (purely for visual effect)
lol	= adds water colored border to coastline (purely for visual effect)
labels	= undocumented
labcex	= undocumented
LT	= undocumented
plot.rivers	= undocumented
addsubareas	= undocumented
subsetSurveyStrata	= undocumented
addbasemap	= undocumented
...	= undocumented

Author(s)

Brad Hubley

Examples

bioMap(area='lfa34')

BradHubley/SpatialHub documentation built on April 6, 2024, 4:43 p.m.